PhenoExtract
PhenoExtract is a SYNTHETIC/DEMO clinical model for phenotype extraction from records. Outputs are deterministic demo values — NOT for clinical use. Trained (synthetically) on de-identified sequence data.
Sequence
BroadOpen Collective
License: Apache-2.0
v3.8.7
RTG 3.8
DL 80,990
Metrics
| Metric | Value | Split |
|---|---|---|
| F1 | 0.919 | Synthetic hold-out |
| Calibration (ECE) | 0.037 | Synthetic |
| Inputs | Outputs |
|---|---|
| Clinical text | HPO phenotype terms |
Run a synthetic prediction
Returns a deterministic synthetic result — clearly labeled, not for clinical use.
API integration
Call this model from your pipeline (demo — no real key required):
import requests
r = requests.post("https://api.biofoundry.ai/v1/models/bf-046-phenoextract/predict",
headers={"Authorization": "Bearer <API_KEY>"},
json={"input": "<clinical text>"})
print(r.json()) # -> synthetic demo prediction
See the API reference · JSON: /api/models/bf-046-phenoextract
Version history
| Version | Status | Notes |
|---|---|---|
| v3.8.0 | Archived | Synthetic release note 0 |
| v3.8.1 | Archived | Synthetic release note 1 |
| v3.8.2 | Archived | Synthetic release note 2 |
| v3.8.3 | Archived | Synthetic release note 3 |
| v3.8.4 | Archived | Synthetic release note 4 |
| v3.8.5 | Archived | Synthetic release note 5 |
| v3.8.6 | Archived | Synthetic release note 6 |
| v3.8.7 | Current | Synthetic release note 7 |
Community contributions: 89 synthetic contributors have submitted evaluations and fine-tunes.